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What Is the Difference Between SQF and the FDA?

SQF vs FDA difference

SQF versus the FDA

The Safe Quality Food (SQF) program and the U.S. Food and Drug Administration (FDA) are both integral to ensuring food safety, but they serve different roles and functions within the realm of food regulation and certification. Understanding their differences is crucial for food industry professionals and consumers alike.

Safe Quality Food (SQF) Program Overview

  1. Nature and Focus: SQF is a voluntary, global food safety and quality certification program. It is administered by the Safe Quality Food Institute (SQFI), a division of the Food Marketing Institute (FMI). The program is designed to meet industry, customer, and regulatory requirements for all sectors of the food supply chain.
  2. Standards and Certification: SQF provides a comprehensive food safety and quality management system. It outlines specific standards that food producers, manufacturers, and distributors must meet to obtain certification. These standards are industry-driven and are intended to demonstrate that a company has a robust food safety and quality management system in place. The current SQF Code is Edition 10, released in March 2026. Facilities are transitioning from Edition 9, with Edition 10 audits beginning in February 2027. Edition 10 introduces enhanced food safety culture requirements, formal change management procedures, and expanded environmental monitoring obligations.
  3. Role of SQF Practitioner: A key component of SQF is the role of the SQF Practitioner, who is responsible for developing, implementing, and maintaining an organization’s SQF System. This individual ensures that the business adheres to SQF standards and is prepared for periodic audits.
  4. Global Reach: While SQF is recognized globally, it is particularly prevalent in industries and markets where businesses are seeking to establish credibility with international trading partners.

U.S. Food and Drug Administration (FDA) Overview

  1. Nature and Focus: The FDA is a federal agency within the United States Department of Health and Human Services. Its primary focus is to protect public health by ensuring the safety, efficacy, and security of human and veterinary drugs, biological products, medical devices, the nation’s food supply, cosmetics, tobacco products, and products that emit radiation.
  2. Regulatory Authority: Unlike SQF, the FDA has legal and regulatory authority. It is responsible for enforcing laws enacted by the U.S. Congress and has the power to regulate food production, approve food additives, issue food safety standards, conduct inspections, and enforce compliance with federal food safety laws.
  3. Public Health and Safety: The FDA’s role encompasses a broad range of public health responsibilities, including responding to foodborne illness outbreaks, conducting research on food safety, and educating the public about food safety and nutrition.
  4. Mandatory Compliance: Compliance with FDA regulations is mandatory for food producers and distributors operating in or exporting to the United States. The FDA sets regulations that are legal requirements, such as those stemming from the Food Safety Modernization Act (FSMA).

Key Differences between SQF and FDA

  • Mandatory vs. Voluntary: FDA compliance is legally required for relevant industries in the U.S., while SQF certification is voluntary and often driven by market demands or a desire for recognized best practices in food safety and quality.
  • Scope and Reach: The FDA’s scope is regulatory and focused on public health, primarily within the United States, whereas SQF is a global certification system focused on best practices in food safety and quality.
  • Enforcement vs. Certification: The FDA has enforcement power and can impose legal actions, whereas SQF provides a certification that indicates adherence to its standards but does not have regulatory enforcement power.

How the FDA’s 2024 and 2025 Changes Affect Food Manufacturers

The regulatory environment for food manufacturers has shifted considerably since late 2024, and both the FDA and SQF are navigating this period of change in parallel. Understanding these developments matters for any facility managing both FDA compliance and SQF certification.

The FDA’s Human Foods Program launched in October 2024. The FDA undertook the largest reorganization in its modern history, consolidating food safety and nutrition functions under a single unified Human Foods Program (HFP). This replaced the former Center for Food Safety and Applied Nutrition and brought together inspection priorities, compliance, and nutrition policy under one structure reporting directly to the FDA Commissioner. For food manufacturers, this means a more integrated approach to FDA oversight, with clearer accountability lines for how the agency handles inspections, responses to outbreaks, and enforcement actions.

Significant FDA staffing changes occurred in 2025. Under the Trump administration’s restructuring of the U.S. Department of Health and Human Services, approximately 3,500 FDA staff were affected in early to mid 2025, including food safety scientists, toxicologists, and microbiologists. Consumer protection organizations raised concerns about the impact on food safety oversight capacity, particularly for non-inspection functions like policy development, allergen research, and food additive safety review. Food manufacturers should monitor FDA guidance communications closely during this period, as agency responsiveness and rulemaking timelines may be affected.

SQF Edition 10 is now in effect as a transition standard. Released in March 2026, SQF Edition 10 introduces requirements that align closely with FSMA’s preventive controls framework, including formal Change Management procedures, stronger food safety culture expectations, and a more rigorous environmental monitoring program. Facilities that have invested in FSMA compliance will find much of this familiar ground. For companies managing both SQF certification and FDA compliance, Edition 10 represents a convergence of standards that reduces duplication and strengthens the overall food safety system.

The practical takeaway for food manufacturers is this: SQF certification has always operated alongside FDA compliance, not in place of it. In a period when FDA’s own structure and capacity are in flux, a well-maintained SQF system provides a documented, third-party-verified foundation that demonstrates food safety commitment independent of regulatory inspection cycles.

In conclusion, while both SQF and the FDA are pivotal in ensuring food safety, they operate differently. SQF is a voluntary certification system with a global reach, focusing on best practices in food safety and quality, while the FDA is a regulatory body with legal authority to enforce food safety laws within the United States.

FoodReady has FDA Consultants and SQF Consultants to help you prepare for any audit or inspection. 

FAQs:

Can a business be both FDA-regulated and SQF-certified?

Yes, a business can be regulated by the FDA and also choose to obtain SQF certification for enhanced food safety and quality management.

Is FDA approval required for all food products?

Staple foods like fresh fruits and vegetables, along with most raw food commodities, are exempt. However, processed foods, additives, and certain food products must undergo FDA review before they are allowed on the market.

What does an SQF Practitioner do?

An SQF Practitioner develops, implements, and maintains an organization’s SQF System, ensuring adherence to SQF standards and readiness for audits.

Is SQF recognized by the FDA?

The SQF program is not controlled by the FDA but is recognized for its alignment with FDA regulations. The program’s standards are in line with the FDA FSMA PCHF rule. SQF certification increases confidence that FDA food safety requirements are met.

Is compliance with FDA regulations mandatory?

Yes, for food producers and distributors in the U.S., compliance with FDA regulations is legally required.

What is the FDA Human Foods Program and does it affect my facility?

Yes. The FDA launched its unified Human Foods Program in October 2024, consolidating all food safety and nutrition functions under one program. It is the primary FDA body overseeing food facility inspections, FSMA compliance, and food safety policy. Any FDA-regulated food facility is subject to its oversight.

Picture of Saro Loucks

Saro Loucks

Content Director, HACCP Certified / SQF Practitioner
Saro Loucks is the Director of Content and a Food Safety Advisor for FoodReady. Saro is certified in HACCP and a trained SQF Practitioner. When Saro is not editing, writing, or advising new customers on what food safety goals they should pursue, she enjoys spending time with her family, baking gluten-free sourdough bread, and playing Mahjong.

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